Preprocessing Steps and Available Function Candidates
This page lists the preprocessing functions included in each step.
Preprocessing Step: filter.gene
dance.transforms.FilterGenesPercentiledance.transforms.FilterGenesScanpyOrderdance.transforms.FilterGenesPlaceHolder
Preprocessing Step: filter.cell
dance.transforms.FilterCellsScanpyOrderdance.transforms.FilterCellsPlaceHolderdance.transforms.FilterCellsCommonMod
Preprocessing Step: normalize
dance.transforms.ColumnSumNormalizedance.transforms.ScTransformdance.transforms.Log1Pdance.transforms.NormalizeTotaldance.transforms.NormalizeTotalLog1Pdance.transforms.tfidfTransformdance.transforms.NormalizePlaceHolder
Preprocessing Step: filter.gene(highly_variable)
dance.transforms.FilterGenesTopKdance.transforms.FilterGenesRegressiondance.transforms.FilterGenesMatchdance.transforms.HighlyVariableGenesRawCountdance.transforms.HighlyVariableGenesLogarithmizedByTopGenesdance.transforms.HighlyVariableGenesLogarithmizedByMeanAndDispdance.transforms.FilterGenesNumberPlaceHolder
Preprocessing Step: feature.cell
dance.transforms.CellPCAdance.transforms.CellSVDdance.transforms.CellSparsePCAdance.transforms.WeightedFeaturePCAdance.transforms.WeightedFeatureSVDdance.transforms.GaussRandProjFeaturedance.transforms.FeatureCellPlaceHolder