Preprocessing Configuration Library

This document provides a curated collection of configuration files for data preprocessing in bioinformatics. The configurations are organized by analytical task, such as Cell Type Annotation, Clustering, and Joint Embedding. Each file details a recommended workflow for a specific algorithm, designed to ensure reproducibility and serve as a best-practice starting point for analysis.

Tasks

• Preprocessing for Clustering
• Preprocessing for Cell Type Annotation
• Preprocessing for Imputation
• Preprocessing for Joint Embedding
• Preprocessing for Spatial Domain Identification
• Preprocessing for Cell Type Deconvolution